Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs112725630 chr14:24421874 C/T 4.08E-5 508 23.58 21 15.53 KM Plot
LGG rs11273735 chr10:107891124 C/CTTTTAAGTAGATTA 7.43E-5 499 21.6 29.53 13 KM Plot
LGG rs112750052 chr5:169061359 A/T 2.26E-8 497 22.12 23.85 6.83 KM Plot
LGG rs112766318 chr6:53128143 C/T 2.4E-5 509 22.58 22.23 14.8 KM Plot
LGG rs112766919 chr5:169006411 C/T 1.65E-8 506 22.37 23.85 6.83 KM Plot
LGG rs112782991 chr14:24414811 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs112807275 chr6:53114186 G/A 3.51E-5 509 22.6 20.23 14.8 KM Plot
LGG rs112825520 chr7:127272090 G/A 9.79E-6 509 21.6 26.77 12.4 KM Plot
LGG rs112840985 chr14:102187194 G/C 1.09E-14 505 21.77 27.6 5.4 KM Plot
LGG rs112845645 chr14:24412589 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs112858692 chr18:72050450 C/T 6.94E-5 507 22.6 21.63 6.7 KM Plot
LGG rs112869618 chr5:168972375 G/A 1.42E-8 509 22.12 23.85 6.83 KM Plot
LGG rs112883733 chr14:24422936 C/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs112964443 chr5:169036653 T/C 1.64E-8 506 21.85 24.07 6.83 KM Plot
LGG rs113031669 chr6:53113145 G/A 1.85E-5 509 22.47 23.5 14.8 KM Plot